The BV-BRC Web Application
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Updated
Sep 19, 2024 - JavaScript
The BV-BRC Web Application
The BV-BRC Web Application
normalizing metagenomics abundances based on OTU abundances.
Condense and summarize many results form PADLOC into CSV for heatmaps
Computer vision in the service of bacteriology refers to the use of computer algorithms and technology to analyze and interpret images of bacteria for the purpose of identifying and characterizing different types of bacteria.
Inofficial R client for the DSMZ's Bacterial Diversity Metadatabase (former contact: @katrinleinweber). https://api.bacdive.dsmz.de/client_examples seems to be the official alternatives.
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
Bacterial gene duplication analysis pipeline
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
Curve Growth modeling-IPASS project
code used in van Raaphorst, Kjos & Veening (2017), Chromosome segregation drives division site selection in Streptococcus pneumoniae, PNAS
🔗 A simple nextflow of shovill for running multiple samples at once on multiple cores computer or HPC (i.e. slurm, sge,...)
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