bgc
Here are 11 public repositories matching this topic...
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
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Sep 6, 2021 - Jupyter Notebook
BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.
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Jun 9, 2023 - R
Methods and classes to support Biosynthetic Gene Cluster analysis
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Sep 9, 2024 - Python
File conversion scripts for DNA sequence data
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Apr 19, 2021 - Python
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
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Oct 12, 2024 - R
The Functional Order (FunOrder) tool - Identification of essential biosynthetic genes through computational molecular co-evolution – novel tool that allows automated identification of essential genes in a biosynthetic gene clusters (BGC) based solely on genomic data
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Oct 25, 2022
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
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Nov 12, 2024 - Python
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
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Aug 5, 2024 - Python
BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.
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Mar 25, 2024 - R
(Meta-)genome screening for functional and natural product gene sequences
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Oct 30, 2024 - Nextflow
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