Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.

BIDS app wrapping recon-all from FreeSurfer

Resting state HRF estimation from BOLD-fMRI signal

A BIDS App for minimal preprocessing using the HCP Pipelines

A Django(backend) & React(frontend) based full-stack real time auction application

BIDS App containing an instance of the SPM software.

Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.

Predicts brain age, based on data from Freesurfer 5.3

Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.

runs MVPA and RSA analysis BIDS bold derivative data

an SPM centric BIDS app

BIDS App for resting state signal extraction using nilearn.

BIDS App for BROCCOLI

Reconstruction of preprocessed q-space images (dMRI)

Portable, modular, reusable, and reproducible processing pipeline software for fetal brain MRI super-resolution

Pipeline for preprocessing of fMRI and structural MRI scans

runs fast optimization of preprocessing pipelines for BOLD fMRI