BIDS app wrapping recon-all from FreeSurfer
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Updated
Apr 30, 2024 - Python
BIDS app wrapping recon-all from FreeSurfer
A BIDS App for minimal preprocessing using the HCP Pipelines
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
Generate subject connectomes from raw BIDS data & perform inter-subject connection density normalisation, using the MRtrix3 software package.
BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)
Resting state HRF estimation from BOLD-fMRI signal
BIDS app for NeuroData's MRI to Graphs pipeline
BIDS App for resting state signal extraction using nilearn.
BIDS app using deepMReye to decode eye motion for fMRI time series data.
Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.
implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.
BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.
runs MVPA and RSA analysis BIDS bold derivative data
runs fast optimization of preprocessing pipelines for BOLD fMRI
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