Reconstruction of preprocessed q-space images (dMRI)

an SPM centric BIDS app

implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.

Improve the accuracy, precision, and consistency of automated labeling and shape analysis of human brain image data

Hyperalignment is a functional alignment method that aligns subjects' brain data in a high-dimensional space of voxels/features.

BIDS App for resting state signal extraction using nilearn.

runs fast optimization of preprocessing pipelines for BOLD fMRI

BIDS app for NeuroData's MRI to Graphs pipeline

BIDS app wrapping recon-all from FreeSurfer

This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK

Predicts brain age, based on data from Freesurfer 5.3

BIDS App for calculating cortical thickness using ANTs

PCP Quality Assessment Protocol

BIDS App for BROCCOLI

BIDS App containing an instance of the SPM software.

BIDS App containing an instance of the SnPM software.

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

A BIDS App for minimal preprocessing using the HCP Pipelines

BrainSuite's structural, diffusion, and functional MRI processing pipelines with QC functionalities.

BIDS app using deepMReye to decode eye motion for fMRI time series data.