#

bioimaging

Here are 32 public repositories matching this topic...

ome / B3D

Clone of https://git.embl.de/balazs/B3D

compression hdf5 codec bioimaging

Updated Oct 2, 2017
C++

aquilesC / background-free

Paper on how to supress background while imaging gold nanorods through the use of the anti-Stokes emission.

luminescence gold imaging nanoparticles bioimaging nanorods anti-stokes background-suppression

Updated Oct 9, 2018
TeX

YogiOnBioinformatics / Bioimaging-Informatics-Machine-Learning-for-Cancerous-Breast-Cell-Detection

Worked with Dr. Shandong Wu at University of Pittsburgh to use software to improve outcomes for breast cancer risk detection.

machine-learning bioinformatics matlab computational-biology cancer-imaging-research breast-cancer-prediction support-vector-machines prediction-algorithm fuzzy-cmeans-clustering breast-cancer breast-cancer-tumor bioimaging breast-cancer-diagnosis mammography-density

Updated Jan 2, 2019
MATLAB

anthonytec2 / xrayscanner

Python 3 x-ray simulator

python numpy detector gpu-computing numba xray bioimaging imaging-scenario

Updated Jan 26, 2019
Jupyter Notebook

SpectraScope

ggirelli / SpectraScope

Interactive interface to visualize spectra and filter sets for any microscope. Easily customizable.

spectrum color filter optics wavelength spectra microscopy microscope bioimaging

Updated Jul 7, 2020
JavaScript

rezacsedu / DeepCOVIDExplainer

DeepCOVIDExplainer: Explainable COVID-19 Diagnosis from Chest X-ray Images

bioinformatics deep-neural-networks deep-learning artificial-intelligence healthcare bioimaging covid-19

Updated Nov 16, 2020
Jupyter Notebook

chillxcode / Classification-of-Breast-Cancer-Images-Using-Deep-Learning-Methods

Graduation Project

keras cnn classification bach bioimaging breast-cancer-images

Updated Jan 17, 2021
Python

ggirelli / radiantkit

A Python3 Radial Image Analysis Toolkit

image-processing image-segmentation image-analysis microscopy hacktoberfest bioimaging format-conversion-tool

Updated Feb 4, 2022
Python

Turku-BioImaging / omero-docker

Deploy an OMERO server using Docker Compose

docker omero microscopy bioimaging

Updated May 23, 2022
Shell

ome / conda-omero-py

OMERO.py Conda package

python conda omero ome bioimaging py-conda

Updated Jun 1, 2022

FabrizioMusacchio / ZARR_tests

Python code that I used in my blog posts on the Zarr file format.

python omero ome bioimaging bioimage-analysis microscopy-images zarr microscopy-data ome-zarr

Updated Oct 24, 2022
Python

molecular-partner-prediction

Yu-Group / molecular-partner-prediction

Predicting successful CME events using only clathrin markers. 🦠📈

tracking data-science machine-learning bioinformatics statistics computational-biology prediction python3 classification segmentation computational feature-engineering cell-biology bioimaging endocytosis cell-transport

Updated Feb 6, 2023
Jupyter Notebook

AlanRace / imc-rs

Rust library for reading imaging mass cytometry (IMC) data stored in .mcd files.

rust bioimaging multiplexed-imaging imaging-mass-cytometry

Updated Feb 21, 2023
Rust

AlanRace / biquinho

Visualisation software for imaging mass cytometry data

visualization bioimaging imaging-mass-cytometry

Updated Feb 22, 2023
Rust

TileDB-Inc / napari-tiledb-bioimg

TileDB BioImaging plugin for Napari

bioimaging tiledb napari-plugin napari

Updated Jun 5, 2023
Python

ciccalab / SIMPLI

SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

life-sciences-image gating mcd ome-tiff imc histology image-analysis-workflows tissue-classification cell-segmentation bioimage-informatics bioimaging single-cell-analysis bioimage-analysis histological-images immunofluorescence bioimage-tools imaging-mass-cytometry tissue-analysis

Updated Jul 11, 2023
R

psobolewskiPhD / JAX_NEBioimaging_napari_community_slides

Slides for a presentation about contributing to the napari community

bioimaging napari

Updated Oct 20, 2023
HTML

sule213 / anavo

Analysis of variance (ANOVA) is a collection of statistical models and their associated estimation procedures (such as the "variation" among and between groups) used to analyze the differences among means.

computer-vision image-processing bioinformatics-pipeline scientific-computing bioinformatics-analysis bioimaging

Updated Mar 2, 2024
Jupyter Notebook

Acto3D / Acto3D

3D volume rendering software for fluorescence microscopy

volume-rendering fluorescence 3d bioimaging

Updated May 18, 2024
Swift

BodenmillerGroup / cytomapper

R package for visualization of highly multiplexed imaging data

spatial-analysis single-cell bioimaging imaging-mass-cytometry

Updated Jun 25, 2024
R

Improve this page

Add a description, image, and links to the bioimaging topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the bioimaging topic, visit your repo's landing page and select "manage topics."