Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
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Oct 25, 2024 - Bikeshed
#
bioimaging
Here are 32 public repositories matching this topic...
Python libraries for loading, running and packaging bioimage.io models
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Nov 8, 2024 - Jupyter Notebook
Discover, install, and share napari plugins
python
tracking
machine-learning
deep-learning
analysis
detection
plugins
themes
registration
segmentation
imaging
denoising
bioimaging
napari-plugin
napari
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Sep 11, 2024 - TypeScript
C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.
python
c-plus-plus
cross-platform
image-processing
stitching
high-performance-computing
tomography
image-analysis
brain-imaging
bioimage-informatics
cluster-computing
computing-cluster
bioimaging
bioimage-analysis
3d-images
non-rigid-registration
non-rigid-stitching
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Aug 30, 2024 - C++
Zarr Homepage
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Oct 28, 2024 - JavaScript
DeepCOVIDExplainer: Explainable COVID-19 Diagnosis from Chest X-ray Images
bioinformatics
deep-neural-networks
deep-learning
artificial-intelligence
healthcare
bioimaging
covid-19
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Nov 16, 2020 - Jupyter Notebook
R package for visualization of highly multiplexed imaging data
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Jun 25, 2024 - R
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
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Nov 9, 2024 - Python
SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
life-sciences-image
gating
mcd
ome-tiff
imc
histology
image-analysis-workflows
tissue-classification
cell-segmentation
bioimage-informatics
bioimaging
single-cell-analysis
bioimage-analysis
histological-images
immunofluorescence
bioimage-tools
imaging-mass-cytometry
tissue-analysis
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Jul 11, 2023 - R
Python 3 x-ray simulator
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Jan 26, 2019 - Jupyter Notebook
A Python3 Radial Image Analysis Toolkit
image-processing
image-segmentation
image-analysis
microscopy
hacktoberfest
bioimaging
format-conversion-tool
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Feb 4, 2022 - Python
BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
python
slurm
high-performance-computing
fair
image-analysis
omero
bioimaging
high-throughput-screening
high-content-screening
cytomine
biomero
biaflows
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Oct 21, 2024 - Python
3D volume rendering software for fluorescence microscopy
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May 18, 2024 - Swift
Predicting successful CME events using only clathrin markers. 🦠📈
tracking
data-science
machine-learning
bioinformatics
statistics
computational-biology
prediction
python3
classification
segmentation
computational
feature-engineering
cell-biology
bioimaging
endocytosis
cell-transport
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Feb 6, 2023 - Jupyter Notebook
Scripts for use with BIOMERO
slurm
high-performance-computing
fair
image-analysis
omero
bioimaging
high-throughput-screening
high-content-screening
cytomine
biomero
biaflows
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Oct 22, 2024 - Python
Worked with Dr. Shandong Wu at University of Pittsburgh to use software to improve outcomes for breast cancer risk detection.
machine-learning
bioinformatics
matlab
computational-biology
cancer-imaging-research
breast-cancer-prediction
support-vector-machines
prediction-algorithm
fuzzy-cmeans-clustering
breast-cancer
breast-cancer-tumor
bioimaging
breast-cancer-diagnosis
mammography-density
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Jan 2, 2019 - MATLAB
Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.
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Nov 7, 2024 - Python
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