OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.
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Updated
Jan 11, 2024 - HTML
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.
The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Explore biomolecular pathways in Reactome from the command-line or a Python script
A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.
Molecular interactions inference from single-cell multi-omics data
This repository includes Matlab codes/routines that were used in our manuscript entitled "Importance sampling for a robust and efficient multilevel Monte Carlo estimator for stochastic reaction networks" that can be found in this preprint: https://arxiv.org/abs/1911.06286
MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.
Visualisation and Analysis of Networks conTaining Experimental Data
R Package: Steiner tree approach for graph analysis
Mutual Interactors: A graph-based machine learning model with applications in molecular phenotype prediction
Evolution of protein interactomes across the tree of life
3D Spiking neural network simulation exploring Spike Timing Dependent Plasticity (STDP)
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
Translation between CellDesigner-flavoured SBML and SBGN-ML
MCRM: Mother Compact Recurrent Memory
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
Step into the future.
R package for de novo pathway enrichment using KeyPathwayMiner
Context-sensitive creation of kinetic equations in biochemical networks
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