blastn
Here are 36 public repositories matching this topic...
The impact of transitive annotation on the training of taxonomic classifiers
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Mar 23, 2024 - Jupyter Notebook
This repository conatins bash scripts for performing a blast search using a custom database of BOLA-DRB3 alleles that were sequenced using Sanger sequencing.
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Dec 20, 2023
various tools that help with deep sequencing analysis
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Oct 26, 2023 - Python
BLAST searches in parallel using GNU Parallel
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Jul 23, 2024 - Python
Scripts to run benchmarks of BLAST and PLAST on a supercomputer
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Jan 30, 2018 - Shell
A tool for analyzing transfers between genomes
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Sep 25, 2024 - R
Container for blastn and Jupyter notebook
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Jun 4, 2019 - Shell
Automações para realizar alinhamentos em grande escala com o Blast
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May 27, 2024 - Python
DNA barcoding analysis pipeline
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Jul 20, 2023 - Python
A typesafe Scala BLAST API
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Oct 19, 2017 - Scala
BLAST without Sys.Call()
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Aug 2, 2024 - C++
Demo of blastn tool for bioinformatics
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Jun 24, 2024 - Jupyter Notebook
Parser of BLAST results
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Aug 5, 2023 - Python
How to automatically download blastn database, run blastn, and extract blastn hit sequences?
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Apr 17, 2024 - Shell
omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…
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May 7, 2021 - Python
This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.
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Jul 12, 2017 - PHP
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