G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
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Updated
Oct 20, 2022 - C++
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
Microsoft Azure HPC & Big Compute
An automated pipeline for retrieving orthologous DNA sequences from GenBank in R
Seamless Integration of BLAST Sequence Searches in R
genomic alignment similarity search tool
Obsolete!! Begin to turn to PrimerServer2
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
A Fully Automatic Method for Predicting Contact Maps of RNAs by Evolutionary Coupling Analysis
This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.
Demo of blastn tool for bioinformatics
A program used to find indels on target gene edited by CRISPR/Cas9
Container for blastn and Jupyter notebook
omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…
Automações para realizar alinhamentos em grande escala com o Blast
The impact of transitive annotation on the training of taxonomic classifiers
DNA barcoding analysis pipeline
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