Python library for attractor identification and control in Boolean networks
-
Updated
May 23, 2024 - Jupyter Notebook
#
boolean-networks
Here are 10 public repositories matching this topic...
Synthesis and Reprogramming of Most Permissive Boolean Networks
-
Updated
Oct 23, 2024 - Python
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
machine-learning
bioinformatics
scikit-learn
computational-biology
pandas
python3
scrna-seq
single-cell-rna-seq
boolean-networks
-
Updated
May 17, 2024 - Python
Distributed simulations and analysis of synchronous Boolean networks
python
bioinformatics
systems-biology
mpi
boolean-networks
regulatory-networks
boolsi
distributed-simulations
-
Updated
Sep 15, 2022 - Python
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
computational-biology
drug-discovery
biological-networks
in-silico
therapeutic-targets
boolean-networks
biological-simulation
biological-modeling
regulatory-networks
-
Updated
May 14, 2022 - Go
scRNA2BoNI - A general framework to infer Boolean networks from scRNAseq data.
-
Updated
Jan 29, 2024 - Python
The biologist's Boolean attractor landscape mapper, building Waddington landscapes from Boolean networks.
biology
systems-biology
network-science
petri-nets
control-theory
feedback-vertex-set
answer-set-programming
attractors
boolean-networks
discrete-dynamics
waddington-landscape
-
Updated
Nov 4, 2024 - Python
Notebooks demonstrating colomoto.minibn for computing dynamics of Boolean networks with various update modes
-
Updated
Aug 5, 2022 - Jupyter Notebook
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
simulation
modeling
computational-biology
networks
dynamical-systems
fuzzy-logic
biological-networks
logical-operators
edge-computing
networks-biology
boolean-networks
biological-simulation
biological-modeling
regulatory-networks
continuous-logic
edge-computation
edge-tuning
-
Updated
Apr 5, 2019 - R
Executable paper and data demonstrating marker reprogramming of Boolean networks with BoNesis
control
answer-set-programming
attractors
reprogramming
boolean-networks
minimal-trap-spaces
most-permissive
-
Updated
Mar 24, 2023 - TeX
Improve this page
Add a description, image, and links to the boolean-networks topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the boolean-networks topic, visit your repo's landing page and select "manage topics."