An interactive image processing program for biologists written in Python.

A ascii/text game library

Calcium combines the functionality of a digital whiteboard with a code editor and a terminal. It provides a versatile platform for collaborative brainstorming.

Signal Processing Toolbox for Calcium Imaging Data

Package for removing motion artifacts from two-channel imaging

These are tutorials I am making for using Neuro-Collection with ug4

A Data Manipulation and Analysis Package for Calcium Indicator and Waveform Data

Scripts for extraction and analysis of widefield calcium data from awake behaving mice.

Epithelial water and solute transport along the nephron with a focus on calcium transport and regulation.

Code to simulate excitation-contraction coupling in cardiac cells using FE methods

Calcium imaging pipeline for R

Code to simulate local calcium dynamics in ER-PM junctions during store operated calcium entry. This MATLAB code was used to make the figures presented at FASEB Calcium and Cell Function, Lake Tahoe 2018

Scripts to create prominence plots from widefield calcium imaging data. Steinmetz et al., 2017 eneuro

This is MATLAB script created and used via the Trinkaus-Randall Lab at Boston University for the analysis of epithelial cellular calcium signaling during wound healing.

repository for R code from https://doi.org/10.5194/bg-18-2573-2021

📟 A web-based calculator app

Code for IEEE ISBI 2018 publication.

CalciumImaging analysis matlab pipeline for suite2p outputs

Calcium wave simulation scripts