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cellline-tumor-matching

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mcmzxx / mfMap.py

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This repository contains code for MFmap (model fidelity map), a semi-supervised generative model integrating gene expression, copy number and mutation data, matching cell lines to cancer subtypes. MFmap compresses high dimensional omics data of cell lines and bulk tumours into subtype informative low dimensional latent representations and predic…

genomics cancer tcga high-dimensional-data generative-model semi-supervised-learning vae cell-lines ccle cancer-subtype drug-response cancer-stratification cellline-tumor-matching translational-medcine in-silico-perturbation
  • Updated Aug 23, 2021
  • Python

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