📊 Codon usage tables in code-friendly format + Python bindings

A Go package for designing DNA.

A python project for analysis of codon usage for gene or genome analysis

🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies

Python3 implementation of commonly used codon usage statistics

codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.

Simple Python program to perform codon optimization or heterology calculations.

Python package of codon usage bias analysis tools

Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Şen et al. (2020)

Toolkit to analyze codon usage bias

A slimmed down fork of CodonW with python bindings

R Package for Codon Usage Bias Analysis

MATLAB package for codon usage bias and NGS analysis

Comparative analysis pipeline of Population's Codon Usage

A codon pair score/codon pair bias calculator

Currently, we don't have the bandwidth to update and maintain the Python version; please use the R version instead. (https://github.com/mt1022/cubar)

A tool with nice GUI to visualize the codon usage frequencies in whole genomes

A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.

Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)

Analysis of codon positional dependency