Processing DNA Copy Number (CN) Data for Detection of CN Events

Copy Number tree utilities (CNtu)

Genome Alteration Print (GAP)

Pipeline for running the FACETS copy number caller using Snakemake

Probabilistic inference of somatic copy number alterations using repeat DNA (FAST-SeqS)

R package: Parent-specific Copy-number Estimation Pipeline using HT-Seq Data

CNprep Package - Pre-process DNA Copy Number (CN) Data for Detection of CN Events

🔬 R package: Analysis of Large Affymetrix Microarray Data Sets

Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data.

Lifterover copy number segments in whole

High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants

Easy Copy Number !

Copy number calling and variant classification using targeted short read sequencing

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.