A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.

An app store for scientific workflows, tools, notebooks, and services

REANA: Reusable research data analysis platform

An open source platform for managing and analyzing biomedical big data

🦀 SciWIn Client: Reproducible computational Workflows made easy!

The documentation for Dockstore.org

Common Workflow Language reference implementation

CWL based Bioinformatics Workflows

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Website about the project WorkflowHub

🔬 RNA-Seq workflow for Kids-First DRC

🔬 Somatic workflow for Kids-First

A web application to view and share Common Workflow Language workflows

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

Website user interface for Dockstore in Angular2

WDL and CWL compiler for the DNAnexus platform

High-reproducibility CWL runner powered by Guix

🔬 Alignment workflow for Kids-First DRC

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

A translator from WDL to CWL v1.2