Simple bacterial assembly and annotation pipeline
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Updated
Sep 18, 2024 - Nextflow
Simple bacterial assembly and annotation pipeline
A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq
This project plots the effect of selecting different kmer length parameter in 2 different de novo genome assembly tools - AbySS and Velvet.
[A.A. 23/24] R. Napoli
Identification of transposon insertion sites
Basic workflow for nanopore sequencing data
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
Inversion status and de novo assembly of Drosophila melanogaster
Workflow Template
💾 📃 "Reads to report" for public health and clinical microbiology
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
A simple DSL2 workflow: tutorial
🌺 reference-free transcriptome assembly for short and long reads
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
Biocore's de novo transcriptome assembly workflow based on Nextflow
Learning to untangle genome assembly with graph neural networks.
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
Standalone C library for assembling Illumina short reads in small regions
This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.
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