Democratizing ML-powered DNA analysis through efficient on-device analysis and interpretive tools.
A method for variant graph genotyping based on exact alignment of k-mers
The first app for Mobile DNA Sequence Alignment and Analysis
Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
A collection of publications on comparison of high-throughput sequencing technologies.
Sentieon DNAseq
Fake genomes, fake sequencing, real insights.
Deployed medical apps on streamlit
Generalizing deep learning-based variant callers via domain adaptation and semi-supervised learning
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
Fast C code for identifying and removing primers and adapters
Scripts for bioinformatics analysis of sequencing data
A package primarily designed for analysing next generation sequencing DNA data from families with pedigree information in order to identify rare variants that are potentially causal of a disease/trait.
Classify DNA sequence into Binary class using different Classification algorithms.
Data Structures And Algorithms
Tool for generating artificial fastq files which can be used for testing the fidelity of NGS analysis pipelines.
Package to parse DNA kit files, and import them into Laravel
Projects related to Big Data course will be implemented in this repository.
Implementation of BucketMap, a novel cache-efficient, bit-parallel and alignment-free short read mapping algorithm.
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