Official code repository for GATK versions 4 and up
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Updated
Nov 8, 2024 - Java
Official code repository for GATK versions 4 and up
A gui for calculating seguid checksums for biological sequences
UGENE is free open-source cross-platform bioinformatics software
Data intensive science for everyone.
Python application to compare ssNa secondary structures
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings
Easy to use Snakemake metagenomic pipeline that covers a) read-based analysis b) contig based analysis and c) MAG assembly and annotation using a broad set of ready to use and included public databases and annotators
A DNA manipulation library written in Gleam.
tools for working with genome variation graphs
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
A course on genomics and bioinformatics from WU
QSLib is a package for interacting with Applied Biosystems' QuantStudio qPCR machines, intended for non-qPCR uses, such as DNA computing and molecular programming systems.
CoRA Docs
DNA sequence classification AI is based on the dataset from the archive of UC Irvine Machine Learning Repository using Random Forest Classification algorithm.
Examples for using DNA-Evolutions RESTful products
Program in R for calculating RSCU.
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