Package with functions to handle network data and run Infomap, inspired by ecological networks

The R package assembly

Coco provides a fast, exact method to solve variations of the Reserve Selection problem including connectivity. It provides a python implementation using the Gurobi ILP solver

Supplement to chapter 21 of the book "Phyllostomid Bats: A Unique Mammalian Radiation"

Code for trait based simulations of network structure and case study

Scripts and data associated with the paper: Sahul’s megafauna species were vulnerable to plant-community changes due to their position in the trophic network

Analyses of plant-herbivore ecological networks from serpentine and non-serpentine soils. Per-species abundance and H' analyses; empirical networks, subsampled networks, and null models; all figures and analyses

Supplement to the paper Queiroz et al. (2020, Biotropica).

R code for "Predicting predator-prey interactions in terrestrial endotherms using random forest"

R package: Intuitive niche-breadth estimation in multi-trait and phylogenetic dimensions.

Code and data for the paper "Inductive link prediction boosts data availability and enables cross-community link prediction in ecological networks"

Supplementary material to the paper "Dynamics of a plant-pollinator network: Extending the Bianconi-Barabási Model"

Supplementary data from Crestani et al. 2018 (Acta Oecologica)

Code and data accompanying the paper "Local and regional processes drive distance decay in structure in a spatial multilayer plant-pollinator network"