📊 A universal enrichment tool for interpreting omics data

🧬 gget enables efficient querying of genomic reference databases

Gene Set Enrichment Analysis in Python

Visualization of Functional Enrichment Result

Python package to perform enrichment analysis from omics data.

😷 Disease Ontology Semantic and Enrichment analysis

📚 Biomedical knowledge mining using GOSemSim and clusterProfiler

MSigDB gene sets for multiple organisms in a tidy data format

🧬 Gene analysis toolkit based on R

A standalone interactive application for detecting biological significance on a set of genes

Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

Reactome Pathway Analysis

Enrichment Networks for Pathway Enrichment Analysis

A Python package for gene network analysis

This RNAseq data analysis tutorial is created for educational purpose

A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

A set of Shiny apps to provide interactive enrichment analysis and exploration of results.

mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate

Flask app for gene over-representation analysis based on Wikidata.

Gene Co-expression Network analysis pipeline