Sequence-based prediction of peptide-TCR interactions using paired chain data

Experiments for "On TCR Binding Predictors Failing to Generalize to Unseen Peptides", Grazioli et al., Frontiers in Immunology 2022

Epitopedia: identifying molecular mimicry of known immune epitopes

Code for the DiscoTope-3.0 paper and model

Python Eplet Load Calculator

A tool for downloading HLA alleles, epitopes and frequencies

This is APRANK, an Antigenic Protein and Peptide Ranker.

Prediction of Conformational B-cell epitopes in an antigen for human host

Implementation of the Analytic Hierarchy Process (AHP) to obtain the immunogenicity score of wheat lines based on their celiac disease (CD) epitopes matches on alpha- and gamma-gliadins amplicons by NGS and the score for oligopeptides based on an IFN-g ELISpot assays with fresh peripherical blood mononuclear cells (PBMCs).

BMEB Thesis project which develops ssDNA aptamer sequences from probabilistic data per provided protein epitope.

Processing of proteomic files for prolamin peptides analysis and CD epitopes search for each protein fraction.

This is a project to contribute utilities for ViruSurf, a viral db centered in viral sequences.

SRTI - Results in HTML from an immuno-oncology project developed in collaboration with Scripps scientists

Genomic sequence analysis and visualizations to monitor emerging SARS-CoV-2 variants and their potential impact to vaccine efficacy

The Trypanosoma cruzi Antigen and Epitope Atlas: deep characterization of individual antibody specificities in human Chagas Disease patients across the Americas

Linear B-Cell epitope validator