Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally
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Updated
Sep 18, 2024 - R
Technical blog of the Epiverse-TRACE project, where we share opinions and investigations in R package development, or scientific software development more generally
Data Wrangling and Automated Reports from 'SIVIGILA' source
Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies
R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia
R package with tools for estimating vaccine effectiveness and vaccine related metrics
R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters
Software development blueprints for epiverse-trace
[No longer being developed. Use the epichains package instead]. Methods for simulating and analysing the sizes and lengths of chains from branching process models
Estimation of individual level variation in transmission
R package to clean and standardize epidemiological data
R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series
R package for handling linelist data
R-universe for the epiverse-trace GitHub organisation
[Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates
A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.
R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility
An R package for importing epi data into R.
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