fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

A Tool to Annotate and Prioritize Exome Variants

Please consider using/contributing to https://github.com/nf-core/sarek

Exome/Capture/RNASeq Pipeline Implementation using snakemake

🔅 State manager for deeply nested states

Target exome sequencing analysis for NYU NGS580 gene panel

eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data

Statistical analysis on Mutation Annotation Format files from Whole-Exome Sequencing of Tumor samples and Controls.

Snakemake pipeline to validate exfi's performance

PCR primer design

WES HLA Typing based on multiple alternative tools

Codes for exome sequencing class being taught by Tychele N. Turner, Ph.D.

COverage Analysis Tool have been developed in 2016. It aims to automatically find bad quality regions of coding sequences in a set of sequencing data. It includes a graphical interface.

simple pipeline for processing exome sequencing data using BWA and GATK4

Human Whole Exome Sequencing

Reference Genome based Exon Phylogeny Pipeline

Cloud based analysis for Doctors, Researchers, Bioinformaticians and Developers.

Leveraging WES short reads for PAN-EXOME creation and analysis.

Exome Slicer - Application to evaluate sequencing quality when designing an Exome Slice (NGS virtual panel)