A user-friendly and sequencing platform-independent bioinformatics pipeline to build SARS-CoV-2 complete genomes from raw sequencing reads and to investigate variants. Integrated in a combined Galaxy and IRIDA infrastructure.
Predict tools in Galaxy workflow (directed graph)
Galaxy YEP Qc & Viz workflow invocation scripts and input datasets
Optimize XCMS analytical parameters by running IPO workflow (Peak picking + Retention time correction and grouping optimization) on Metabolights studies within the PhenoMeNal EU project.
Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.
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