Disease Association Protein-Protein Link Evaluator (Broad hosted algorithm)
-
Updated
Jan 3, 2024 - Python
Disease Association Protein-Protein Link Evaluator (Broad hosted algorithm)
This is basic GenePattern module written in Python 3. It can be taken as a Template for future modules. (click 'Use this template' to get started)
Genomic Identification of Significant Targets in Cancer
Imports data from the Gene Expression Omnibus (GEO)
Salmon indexer wrapper module for GenePattern.
TCGA.SampleSelection wrapper module for GenePattern.
Wraps the AmpliconSuite-pipeline workflow to identify one or more connected genomic regions which have copy number amplifications.
Creates a GCT file from a set of CEL files from Affymetrix ST arrays.
This a GenePattern Javascript visualizer that creates a CLS file from a GCT file.
Module for GSEA Julia Implementation
Actual creation of the Elastic Principa Graph in the STREAM scRNASeq Trajectory analysis, packaged as a GenePattern module
Detect differentially expressed genes between pairs of trajectory branches
HTSeq (0.11.2) wrapper module: Counting reads in features with 'htseq-count'
Generate the signature subway and stream plots
Step one of the STREAM ssRNA-Seq Trajectory pipeline
Wrapper Script for Harmony designed to work with GenePattern Module Integrator
Determine which tryptic peptides will generate the highest signal in ESI-MS
Detect marker genes that distinguish the different trajectories
Add a description, image, and links to the genepattern-module topic page so that developers can more easily learn about it.
To associate your repository with the genepattern-module topic, visit your repo's landing page and select "manage topics."