The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
-
Updated
Sep 19, 2024 - MATLAB
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
The consensus GEM for Saccharomyces cerevisiae
The generic genome-scale metabolic model of Homo sapiens
SMETANA: a tool to analyse interactions in microbial communities
EMBL GEMs: A collection of GEnome-scale Models for bacterial species
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Genome-scale model of Yarrowia lipolytica.
Common biochemical and topological attributes of metabolic genes recurrently dysregulated in tumors.
Genome scale metabolic models in SBML format
A container for all enzyme constrained models created by GECKO.
Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
Trim, extract, and convert GEMs
Designing microbial communities
Genome-scale metabolic model of Methylococcus capsulatus.
Supplementary data for co-occurrence manuscript
Genome-scale metabolic model of Rhodotorula toruloides
Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3
COMMIT: Community-dependent gap-filling considering metabolite leakage
CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool
Add a description, image, and links to the genome-scale-models topic page so that developers can more easily learn about it.
To associate your repository with the genome-scale-models topic, visit your repo's landing page and select "manage topics."