genome-wide-association-studies

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Here are 11 public repositories matching this topic...

derekmichaelwright / gwaspr

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An R package for plotting GWAS results from the GAPIT package

gwas genomics data-visualization genome-wide-association-studies

Updated Nov 17, 2024
R

jeyabbalas / py-icare

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A Python distribution of iCARE, a tool for individualized Coherent Absolute Risk Estimation.

gwas webassembly survival-analysis cox-proportional-hazard genome-wide-association-studies absolute-risk

Updated Jul 5, 2024
Python

CBIIT / nci-webtools-dceg-linkage

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LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.

linkage-disequilibrium population-genetics haplotype-blocks genome-wide-association-studies single-nucleotide-polymorphisms ld-analysis ld-statistics ld-visualization

Updated Nov 14, 2024
Python

esohkevin / esohkevin.github.io

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esohinformatics

workflow bioinformatics gwas ngs plink vcf genotype whole-exome-sequencing whole-genome-sequencing idat ngs-analysis ngs-pipeline genome-wide-association-studies illumna gtc2vcf gencall

Updated Apr 27, 2024

CirculatoryHealth / CHARGE_1000G_CAC

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CHARGE Consortium: collaboration for mapping targets from 1000G GWAS on coronary artery calcification (CAC) with Maryam Kavousi, Maxime Bos, Clint L. Miller, and Pat Peyser.

gwas rnaseq scrna-seq genome-wide-association-studies coronary-artery-calcification regional-association-plots

Updated Aug 29, 2023
HTML

wletsou / ChromosomeOverlap

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Chromosome Overlap: code accompanying "Refining the genetic risk of breast cancer with rare haplotypes and pattern-mining" by Letsou et al. DOI: 10.26508/lsa.202302183

haplotypes pattern-mining genome-wide-association-studies

Updated Aug 13, 2023
Shell

krassowski / jupyter-locuszoom

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LocusZoom in Jupyter notebooks

bioinformatics gwas jupyter genetics plink jupyterlab locuszoom jupyterlab-extension plink2 genome-wide-association-studies

Updated Jul 20, 2023
TypeScript

vniems / BD-Lithium

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A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).