Home of the Genomic Feature and Variation Ontology (GFVO)

A system for the integration and analysis of heterogeneous functional genomics data.

Documentation site for the Geneweaver project.

GQuery is a software tool for rapidly querying large numbers of bgzip compressed, tabix indexed genomic data files e.g. vcf, maf, bed, bedGraph, etc. from multiple species with different genome builds without the need to develop, debug, and maintain custom file parsers. Search for particular germline or somatic mutations, copy number changes, di…

My personal genomic data science project

The core library for GeneWeaver projects.

The GeneWeaver database interaction code.

Classify enzymes with geomic sequence using spark-ML

Ortholog/homolog mapping for Geneweaver

GETS: a Genomic Tree based Sparse solver. This package accompanies an article to be published in the forthcoming Birkhäuser-ANHA book "Explorations in the Mathematics of Data Science" --- "A genomic tree based sparse solver" by Timothy A. Davis and Srinivas Subramanian.

Tool to calculate a "k-mer pattern partition" from position specific k-mer counts.

Overture.bio website, based on Gatsby static site generator

Sequencing Data Analysis

Python for Bioinformatics

Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.

Study plan for learning Health Data Science(HDS)

Mutational Signatue Analysis using R

Hormone Therapy Decision Support System for Breast Cancer

Introduction to Genomic Data Science with R

The GitHub repository for genomic data science is a collection of resources, tools, and code snippets for analyzing and interpreting genomic data.