Pathogen NGS Documentary

Nextstrain build for mpox virus

Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023

Official place for proposals and details around monkeypox virus lineage designations

Scripts and data for the CoVaRR-Net Pillar 6 notebook

BA.2.86 project with Sigal lab

Data used for analyses in "Genomic Surveillance Reveals Multiple Introductions of SARS-CoV-2 into Northern California" (Deng et al., Science, 2020) https://doi.org/10.1126/science.abb9263

Dr. Buqing Yi

mGEMS Genomic epidemiology with mixed samples

Gallery for GEViT Project

Automated genomic analysis of SARS-CoV-2 sequence data

Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite

Efficiently store FASTA sequences in sqlite compressed with sidecar zstd dictionary

A GLUE project for Rabies Virus (RABV).

Cluster Investigation & Virus Epidemiology Tool