Simple Discord bot that scrapes GISAID SARS-CoV-2 variant frequencies
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Updated
Jan 29, 2022 - Python
Simple Discord bot that scrapes GISAID SARS-CoV-2 variant frequencies
Assisted download of selected samples from GISAID
ShinyApp repo for the CovidTracker, any details further than the codes here available please send an email to rafael.lopes at yale.edu
This repo summarises the data sources, web application, tools and reviews paper of SARS-Cov-2. Trace the study progress of SARS-Cov-2 based on GISAID data.
This tool can be used to download the samples and metadata from GISAID provided you have an existing account with download privileges.
Processing GISAID SARS-CoV-2 emerging variants data and generating a language model using Transformers. The model semantically captures masked glycoprotein amino acid mutations in emerging variants of the SARS-CoV2-virus and gives appropriate scores for each potential aa change.
VariantHunter is a tool for fast detection of emerging SARS-CoV-2 variants. It's an highly flexible and user friendly application for the systematic monitoring of the evolution of SARS-CoV-2 both at global and regional level.
This project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
HDR UK - Resources for 🦠COVID-19 Research
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