hla-sequence

Here are 2 public repositories matching this topic...

bcgsc / HLAminer

⛏ HLA predictions from NGS shotgun data

alignments oxford-nanopore hla-prediction targeted-assemblies hla-sequence shotgun-sequence-datasets

Updated Jun 10, 2024
Perl

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

nanopore cancer phase immunity hla-typing pacbio-data local-assembly loh haplotype reads-binning hla-sequence loss-of-heterozygosity genotype-frequency allelic-imbalance human-leukocyte-antigens

Updated Sep 25, 2024
C++

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hla-sequence

Here are 2 public repositories matching this topic...

bcgsc / HLAminer

deepomicslab / SpecHLA

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