Python library to access Gene Expression Omnibus Database (GEO)

A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.

This is a code tutorial for rna or dna sequence mapping by myself-RyanYip

Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R

A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma

RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2

SLURM job temps @UAlbany

HTSeq TSS plot tutorial

The original LG3 pipeline

Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity