SPAdes Genome Assembler

Software for prediction of plasmid sequences in metagenomic assemblies

Deep learning for Metagenome Assembly Error Detection

Metagenomic binning based on Hi-C data

Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins

Identifying misassemblies via deep learning

Environmental metagenomics, Spring 2021, Physalia Courses

Workflow for metagenome assembly

Statistical package for metaome denovo assembly results.

Code associated with the Ley Lab animal gut metagenome assembly project

Create a blobplot of a holobiont assembly without a reference genome. Example code and data are provided.

This project aims do describe and explore the metagenomes of fern species of the genus Azolla.

Run multiple metagenome filtering programs using Docker containers

Description of the bioinformatic workflow applied in Passaro et al 2019

metacoverage estimation and tags generation from diamond aligner