clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)
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Updated
Dec 8, 2023 - C++
clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)
Software to identify known plasmid sequence from metagenomic assembly using Minhash
rplB/rpsC targeted analyses with shotgun metagenomes
Axolotl is a Python library for scalable genome analysis, addressing the gap in tools for handling the rapid growth of genomic data with easy parallel processing.
a bash based evolautionary pangenome analysis
Synthetic PHasE Rate Estimator by single metagenome sequence
Arche: a functional-optimized annotator for microbial meta(genomes)
Growth Rate Index Calculater wrapped by CWL
ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data
Run multiple metagenome filtering programs using Docker containers
Using a universal reference database, mixed assemblies, and cutting-edge software to give you the quantitative community phylogeny, a complete community functional analysis, and many strain(ish)-level high-quality bins.
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
Teaching materials for SymbNET course: from MAGs to GEMs
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
Statistical package for metaome denovo assembly results.
Software for prediction of plasmid sequences in metagenomic assemblies
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