Repo for Mincall - MinION basecaller we're working on during academic year 2016/2017.

MinION Open-source Nucleotide Identifier for Continuous Analysis - Software for MinION sequencing quantitative metagenomic analysis in real time

MinION Classification & Alerting System

Third generation sequencing techniques rapidly evolved as a common practice in molecular biology. Great advances have been made in terms of feasibility, cost, throughput, and read-length. However, sample contamination still poses a big issue: it complicates correct, high-quality downstream analysis of sequencing data and usage in medical applica…

This is just small command line pipeline to simplify going from ONT Unbasecalled data using Guppy to Assembly using Flye, all of the tools are existing tools.

Pipeline for 3rd Generation sequencing data from MinION

Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.

Automated detection of unfixed mobile genetic elements in long read DNA sequencing data

Clustering DNA reads by barcodes from raw reads. Old code written for my master-thesis.