An awesome microRNA-sequencing pipeline
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Updated
Sep 20, 2024 - Python
An awesome microRNA-sequencing pipeline
multiMiR package in R, providing gene-miRNA-lncRNA interactions for ceRNA network construction
Workflow Template
An open-source R package to comprehensively explore the role of impaired miRNA regulatory networks in complex biological conditions.
All the R scripts I used during my time as a grad student at Clemson University
Scripts of Final Master Project
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
scripts and resources for performing miRNA sequencing analysis using tools like mirPRo and miRDeep2. Explore the code to process reads, map them to the genome, quantify known miRNAs, identify novel miRNAs, and browse the results
miRSim Synthetic Sequence Simulator
Bioinformatics Pipeline
R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.
miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
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