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mothur

Here are 15 public repositories matching this topic...

bathyscapher / Metabarcoding-Pipeline-Building

CUSO Microbiome analysis workshop 2020

r microbiome ecology bioinformatics-analysis dada2 mothur

Updated Jul 13, 2021
R

aortiz24 / FieldLabComparison

microbiome analysis of ant colonies

r silva microbiome-analysis mothur otu-table

Updated May 4, 2018
Shell

Shuyib / mouse_gut_OTU

Vectorization and Unsupervised Learning of Mouse Operation Taxonomic Units to determine which species of bacteria form distinct groups in a dataset.

analysis anaconda pandas-dataframe data-visualization python3 dataset pca-analysis t-sne unsupervised-learning scikitlearn-machine-learning numpy-arrays matplotlib-figures sops gut-microbiome mothur 16s-rrna

Updated Apr 22, 2018
Jupyter Notebook

joycewang914 / Nursing_Home_Patient_Gut_Microbiota

Identifying gut microbiome features associated with the risk of acquiring an enteric drug-resistant organism (e.g. vancomycin-resistant Enterococcus and resistant gram-negative bacteria) in patients recently discharged from acute-care hospital and admitted into nursing homes.

nursing antibiotic-resistance microbiome-analysis journal-article mothur antibiotic-stewardship

Updated Jul 6, 2020
R

NerdVerse2024 / Milk_metagenomics

Milk Metagenomics Analysis of Cow Milk Samples across Global sites Using Mothur

rna-seq data-analysis microbiome mothur metagenomic-pipeline

Updated May 4, 2024

csc-training / chipster-microbial

Microbial Community Analysis with Chipster

training bioinformatics data-analysis exercises microbiology phyloseq mothur amplicon-sequencing

Updated May 24, 2024

SchlossLab / Sovacool_OptiFit_mSphere_2022

The manuscript accompanying the OptiFit algorithm in mothur

snakemake microbiome mothur reproducible-paper

Updated Jun 1, 2022
Python

marius44 / mothur_protocols

Repositorio de pipelines necesarios para analizar secuencias de amplicones illumina con mothur. Se incluyen análisis con asv de bacterias y de hongos (estos últimos poco explicados por Schloss en su SOP).

illumina mothur amplicon-sequencing

Updated Jan 24, 2024
R

k8hertweck / FieldLabComparison

microbiome analysis of ant colonies

r silva microbiome-analysis mothur otu-table

Updated Nov 6, 2018
Shell

SchlossLab / mothur-snakemake-workflow

Snakemake template for microbial amplicon sequence analysis with mothur.

snakemake mothur 16s-rrna

Updated Dec 8, 2022
Python

dizak / mothulity

Easy-to-use tool facilitating work with Mothur.

diversity easy-to-use microbial-communities 16s its fungal microbial-ecology microbial mothur 16s-rrna

Updated Jul 20, 2020
JavaScript

biocorecrg / microbiome_procedures

Mothur procedures for 16S and ITS analysis

fungi 16s its microbiome-analysis phyloseq mothur microbiome-workflow

Updated Apr 14, 2022
R

achillesrasquinha / 16SMaRT

16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).

python bioinformatics reproducible-research sequencing meta-analysis mothur 16s-rrna

Updated Nov 26, 2022
Python

campenr / mothur-py

Python wrapper for the bioinformatics tool mothur

python bioinformatics python-wrapper mothur

Updated Mar 14, 2018
Python

SchlossLab / schtools

Schloss Lab Tools for Reproducible Microbiome Research 💩

rstats microbiome r-package mothur

Updated Aug 22, 2023
R

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