View Designer/X - https://sourceforge.net/projects/vdx/
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Updated
May 10, 2024 - C
View Designer/X - https://sourceforge.net/projects/vdx/
PPR Motif Annotation using Neural Network
a program to predict transcription factor binding sites from single-nucleotide deletion MPRAs
This script takes a FASTA file and a list of motifs (.txt) and generates a .SVG image showing the motifs locations on each sequence.
Multi Index Motif Classification for Soundscapes, an R package
Transceiver Framework: A framework for concurrent multi stage processing of data & MDP: An online motif detector and predictor embedded in the transceiver framework.
EPICS DM2K display manager with additions from Helmholtz-Zentrum Berlin
Simulate gene expression data where gene expression is determined by a linear influential factor, such as motifs.
*Monteagudo-Cascales E., *Gumerov V.M., Fernández M., Matilla M.A., Gavira J.A., Zhulin I.B., Krell T. (2024) Ubiquitous purine sensor modulates diverse signal transduction pathways in bacteria.
mix of python, bash and R functions, scripts and notebooks to benchmark the use of methylation as proxy to infer TF binding
Created in 2024/3/17, using pytorch and MOTIF dataset.
A generator for synthetic, multivariate & heterogeneous datasteams with probabilistically repeating patterns.
An IRIX-toolchest-like app for the unixes out there. Forked from https://github.com/alx210/mwm-utils
A python implementation of the SiMPle-Fast algorithm for audio motif detection
*Cerna-Vargas J-P., *Gumerov V.M., Krell T., Zhulin I.B. (2023) Amine recognizing domain in diverse receptors from bacteria and archaea evolved from the universal amino acid sensor. PNAS, 120, e2305837120
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