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mpox

Here are 11 public repositories matching this topic...

nextstrain / mpox

Nextstrain build for mpox virus

metadata bioinformatics pipeline pathogen phylogenetics genbank augur nextstrain auspice virus-evolution genomic-epidemiology monkeypox mpox

Updated Nov 16, 2024
Python

CDCgov / tostadas

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

Updated Nov 15, 2024
Python

rki-mf1 / MpoxRadar

MpoxRadar frontend codebase: an interactive dashboard for genomic surveillance of MPXV.

dashboard frontend hpi rki genomic-surveillance mpox

Updated Dec 2, 2023
Python

sabaaslam6038 / CEL

CEL Continual Learning

artificial-neural-networks lstm-neural-networks continual-learning elastic-weight-consolidation measles disease-prediction fisher-information-matrix influenza-data static-learning domain-incremental-learning mpox disease-outbreak-prediction

Updated Jan 21, 2024
Python

DataStalker / Mpox-Analysis

This repository features visualizations of monkeypox cases and deaths from Jan 2022 to Aug 2024. It includes a choropleth map and scatter plots analyzing the distribution and trends of the disease worldwide

visualization data-science r geospatial biostatistics rstats data-analysis epidemiology chloropleth monkeypox mpox

Updated Aug 31, 2024
R

OpenOmics / mpox-seek

A rapid pipeline for targeted ONT monkeypox sequencing

snakemake pipeline conda rapid singularity phylogenetics oxford-nanopore mamba monkeypox mpox

Updated Aug 22, 2024
Python

justoneye / Analisis-MPOX-Colombia

Como parte del curso de Fundamentos en Analítica de Datos dictado por Correlation One en alianza con MinTIC se presenta el proyecto de aplicación "Análisis de Casos Positivos de Viruela Símica en Colombia"

data-science data looker excel data-visualization data-analysis cvs dataframe datos-abiertos mintic correlation-one looker-studio mpox

Updated Jun 14, 2023

sequence-review / mpox

Place to discuss mpox virus sequences

bioinformatics genomics virus-evolution virus-genomes sequence-quality monkeypox mpox

Updated Jan 20, 2024

ankushgpta2 / tostadas

🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

python docker metadata bioinformatics pipeline nextflow genetics azure sequencing conda singularity genbank liftoff ncbi sra vadr scicomp nf-tower mpox

Updated Mar 23, 2023
Python

smkerr / mpox-wiki-analysis

👀🦠 Evaluating the predictive power of Wikipedia pageviews for mpox cases 🦠👀

r time-series wikipedia mpox

Updated May 21, 2024
TeX

DQ4781 / Monkeypox-Dashboard

A Real-Time, Data-Driven Infectious Disease Dashboard and Surveillance Application to Monitor the 2022-2023 Global Mpox Outbreak

dashboard surveillance-systems public-health computational-epidemiology mpox

Updated May 9, 2023
Python

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