Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.

Online Megasquirt/Tuner Studio MSQ file viewer

MS Annika is a crosslink search engine based on MS Amanda, aimed at identifying crosslinks of MS2-cleavable crosslinkers from MS2 and MS3 spectra.

Metfrag for Galaxy

MS Amanda is a scoring system to identify peptides out of tandem mass spectrometry data using a database of known proteins.

Export MS Annika crosslink results to different formats.

Convert between common MS data formats.

Extensions for better usability of the cross-linking tool MaXLinker.

Calculates Intensities of Cross-linked Peptides from MS Annika CSMs.

List of all available extensions for our cross-linking search engine MS Annika.

Extensions to use the cross-linking tool Scout with other software.

Generate a spectral library for Spectronaut from MS Annika results.

Adds retention time to dtaselect output files, by reading it from ms2 (either in the local system or in a remote server)