Evaluation framework for oncology foundation models (FMs)

a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imaging datasets, leveraging a unique approach based on graph neural networks (GNNs).

Using a Deep Learning CNN to detect acute lymphoblastic leukemia (ALL) from blood microscopy

VMAT modulation complexity index calculator based on https://github.com/victorgabr/ApertureComplexity

Point of care system for AMPATH clinics

Clinical oncology tumor board decision support system made by the Decider project.

Personalized Network-based Anti-Cancer Therapy Appointment

Crossmapped phenotype ontologies for the oncology domain

Clonal reconstruction from HTS data

Code from my work as Radiation Physicist Assistant at Cookeville Regional Medical Center

A 3D lesion segmentation method on whole-body PET images including automated quality control.

Notes and procedures that I wrote as Radiation Physicist Assistant at Cookeville Regional Medical Center

PD-1 Targeted Antibody Discovery Using AI Protein Diffusion

A benchmark of histopathology Foundation Models on multi-stain Immunohistochemistry immune datasets AIM-FM workshop @ NeurIPS 24

🧠 | Multimodal Integration of Oncology Data System

A project focused on using single-cell RNA sequencing data (scRNA-seq) and pseudo time to improve colon cancer diagnosis and outcomes.

R Package that extracts chemotherapy regimens from drug exposures in the OMOP CDM

Read different files of TSO500 data analysis output and integrate the data.

Repository for code related to the CDGnet tool for prioritizing targeted cancer therapies

The Variantstore is a Java/Groovy-based service application implemented using the Micronaut framework and enables storage and access to information on genomic variants and metadata from a connected database via a RESTful API.