BSR-Based Allele Calling Algorithm
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Updated
Sep 9, 2024 - HTML
BSR-Based Allele Calling Algorithm
Epidemiological surveillance in Python
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
A Disease Outbreak Assistance system using machine learning and Artifitial Intelligence
In this repo. , "Cost Effective Lazy Forward Selection" Algorithm is implemented from scratch in python with only numpy library.
R scripts used in M Cavallaro, L Dyson, MJ Tildesly, D Todkill & MJ Keeling (2023) Spatio-temporal surveillance and early detection of SARS-CoV-2 variants of concern. J. R. Soc. Interface. 20: 20230410. 20230410.
Implementation of Complex Networks Algorithms
rancovr: Cluster detection in R with RAndom Neighbourhood COVeRing
Software supporting M. Cavallaro, et al., Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease. PLoS Comput Biol 18(11): e1010726 (2022) https://doi.org/10.1371/journal.pcbi.1010726.
metagenomics pipeline supporting The UnO Project for identifying pathogens in common across outbreak samples
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