Pipeline to make pairwise comparisons of matched fasta sequences.

If protein sequence NR2F6 is very similar between humans and mice, then mice that have SNP rs11856995 might show photic sneeze reflex (PSR) phenotype.

Pairwise alignment algorithm testing page

An R script to measure the potential influence of different parameters that could have affected the speed of pairwise sequence alignment, using the functions of the Biostrings package.

Sequence Alignment Tool

Projects developed under the Bioinformatics college chair during the 2020/2021 school year

This repository provides implementations for basic sequence alignment techniques, focusing on two popular methods: Dot Plot and Needleman-Wunsch algorithm.

Bio Informatics Lecture Notes @ Faculty of computer and information Sciences ' MU ' for the '4th Year' IT Department

Python implementation for DNA trace reconstruction with marker code, MIT licensed

This program allows to execute Pairwise alignment of proteins from a MS file.

Intro to Bioinformatics course contents

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

This repository contains a simple implementation of a pairwise alignment algorithm for FASTA files using the Needleman-Wunsch algorithm.

Top Coder Problem

SAM Alignment Reconstructor

Generate random sequence pairs to test pairwise aligners

Applications that compute pairwise alignments of two biological sequences

This project includes Needleman-Wunsch and Smith-Waterman algorithms and their afine gap variations (Gotoh) written to work with Cython, PyPy and Numba. Numba JIT shows greater performance. For Best performance use gotoh_jit.py to get only the best score and use gotoh_jit_traceback to get the best alignment

This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!