LLM for Drug Editing, ICLR 2024

This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)

Predict AMPs in (meta)genomes and peptides

A Rust implementation of the LightDock macromolecular docking software

Snakemake-based computational workflow for neoantigen prediction from diverse sources

ProtGraph - A Graph-Generator for Proteins

The GAN model for designing AMP

Python script to visualize helical wheels based on input sequence.

mPARCE: Protocol for iterative optimization of modified peptides bound to protein targets

Electronic lab notebook for organic chemistry

Tools for exploration and analysis of biochemical data like genomics and proteins

Application of deep generative model discovers novel and diverse functional peptides against microbial resistance

A parametric approach for molecular encodings using multilevel atomic neighborhoods applied to peptide classification

Protein Cleaver is a versatile tool for protein analysis and digestion.

Project for course DD2404. The project focuses on creating a classifier for proteins with signal peptides, using machine learning. Currently, the scripts are based on Convolutional neural networks, but I might implement a GAN and a Hidden Markov Model too.

SARS-CoV-2 Peptide Vaccine, Gen 12

Highly customizable research-oriented peptide search engine

Contains relevant project files to publicly available Peptide Alkaloid database "Peptaloid"

Peptide Mapping in Genome and peptide Detection in Transcriptomes