GUI to build and modify Phenotype Algorithm Specification Ontologies
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Updated
Sep 14, 2020 - Java
GUI to build and modify Phenotype Algorithm Specification Ontologies
HPO web browser created with Vaadin
IdeRare Phenotype Analysis suite : Convert Indonesia SATUSEHAT terminology (SNOMED-CT, LOINC, ICD-10) to Rare Disease Terminology / Ontology (HPO, OMIM) and find the likelihood differential gene and disease explaining patient phenotype
The QC software for the OBO version of HPO
PhenoUnit testing framework
Indonesia Exome Rare Disease Variant Discovery Pipeline. Phenotype analysis part available on Streamlit and PyPi
Exploratory Research -- Clustering Similar Patients by Phenotype
Crossmapped phenotype ontologies for the oncology domain
Code to generate ontology annotated objects (e.g. HPO annotated patients)
🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)
Python library to work with HPO (Human Phenotype Ontology) terms and their gene/disease associations
Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms
The QC software for the OWL version of HPO (only text-checks, not so much logic included)
Small program to query OMIM and store output in a local sqlite database.
HPO archive of the ontology and annotations
Scripts, data files and ontologies for the FLOPO project
Ontology for phenotypes pertaining to the nematode Caenorhabditis elegans and related nematodes used by the nematode genome database WormBase
Python library for extracting HPO encoded phenotypes from text
Website for the Phenomics and Machine Learning Team
Bayesian ontology querying from Bauer et al.
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