Code for the AED2 water quality / ecology library

Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow

This is the base code of the University of Victoria (UVic) Earth System Climate Model version 2.9 with the Model of Ocean Biogeochemistry and Isotopes (MOBI).

Calculating future changes in Arctic phytoplankton using the emergent constraint method

A PyTorch implementation of the Multi-Mode CNN to reconstruct Chlorophyll-a time series in the global ocean from oceanic and atmospheric physical drivers

As part of my PhD I created a 1D biogeochemical configuration based on PISCES model (version 1 - Bopp et al, 2005) The configuration was created to study the impact of environmental changes (mainly Mixed Layer Depth and Light) over Southern Ocean primary production, from the seasonal to decadal scales.

Supplementary files for Ribeiro et al. ISME 2018

Research Derby project to study the connection between MJO, chlorophyll-a, and SST

Modules for the Lagrangian Plankton Model (LPM) integrated on the PALM LES model in the ocean mixed layer

Functions and a walkthrough to visualize common photosynthesis-irradiance relationships

assess the impact of 2024 Central American fires on surface ocean properties in the Gulf of Mexico

Southern Ocean phytoplakton observations stored in a relational SQL database

Planktos is an image recognition model tailored for classifying various species of phytoplankton. Built using cutting-edge machine learning algorithms, this tool enables researchers and environmentalists to automate and accelerate the identification process, enhancing studies in marine biology and ecology.

Branch of the SoG-bloomcast project that uses an ensemble forecast.

Scripts, data and outputs to process the data and recreate the figures from Rohwer, Ladwig et al. (2022)

Calculate various MHWs(Marine Heat Waves) properties from daily SST datas

An implementation of the depth-resolved phytoplankton primary production model by Westberry et al. 2008.

This work is part of the PhytoArk project.

from first principles to end to end ecosystem models