Building a fully automized pipeline for population genomic and conservation genomic analyses.

R script employed in the manuscript 'Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii' to compute the frequency of pairwise genetic distances among individuals.

Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.

A modification to Sikora's admixr to make it more accesible

Genomics Commons

🧬 FABBIT: FAst coregenome alignment Based on Bidirectional best hIT 🚀

Population genomics for Kuaka Whenua Hou | Whenua Hou diving petrels and Kuaka | Common diving petrels

Workflow for calling variants using data from 3000 Rice Genomes project

Null models, performance testing, and power estimation with population simulations

Code accompanying the manuscript on Genome variation in alpine bumblebees.

ancient population genomics

Genomic Analysis of Introgressed Alleles with Machine Learning

software implementation of the hidden Markov model developed in Kern and Haussler (2010)

A script to plot ancestral coefficients from population genetic analyses on maps

A Javascript chart for Linkage Disequilibrium (based on three.js)

Custom scripts for creating plots in Circos

This tool is aimed at helping to analyze small to medium vcf files of genotyped individuals.

rust tools for the demes ecosystem