In Silico Trypsin/Lys-C Clevage Site Prediction

Proteomic evidences can improve the existing genome annotation by finding novel coding regions or genome reannotations. These scripts can perform such tasks.

My codes for proteomics, genomics and proteogenomics

A tool for quality control and annotation of variant peptides after FDR in proteogenomics

Protegenomics analysis based on Pangenome references

High performance io library for proteogenomics

Scripts for lncRNA Project is a novel mass spectrometry-based peptide sequencing pipeline of the identification of LncRNA-derived immunopeptidome.

ProteoGenDB: A Fast Proteogenomic Pipeline for Identifying Sequence Variants in Proteomics Data

Library for Proteomics research literatures, tools and databases.

Denovo Proteogeomics pipeline to identify clinically relevent novel variants from RNAseq and Proteomics data.

Python packages for easy execution of proteogenomic workflow

ProteomeGenomics Database Creation - Nextflow Pipeline

6-frame proteogenomic peptide-spectrum match identification engine

A python library with scripts and helpers classes for quantms workflow

Saccharomyces cerevisiae information, gene calling and ORF identification assistant

Research into statistical distributions of genomes, proteomes and reactomes

The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.

PGATK: ProteoGenomics Analysis ToolKit

Multi-Omics Peptide Generator

Proteogenomics database-generation tool for protein haplotypes and variants