PyMOL extension to color AlphaFold structures by confidence (pLDDT).
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
A Consensus Docking Plugin for PyMOL
A collection of PyMOL plugins to visualize atomic bonds.
Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents
A PyMOL plugin for visualizing vibrations in molecules and solids
parKVFinder: thread-level parallel KVFinder
Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation technique with coordinate-based particles). It can be used on a script layer or as an interactive plugin for PyMol. Features are different selection modes and Optimizers to distribute restraints.
NRGsuite is a PyMOL plugin (GUI) for FlexAID
parKVFinder-win: thread-level parallel KVFinder for Windows
A tool for insight into protein-nucleic acids interaction information
calculate chemical bond strength in solids, surfaces and molecules
A simple script to generate Ramachandran plot from Pymol.
noodle-strut is an interactive 3D printing structural support module for PyMOL
MODE-TASK plugin for PyMOL
PyMOL script to calculate backbone RMSD of two polypeptides of same origin
PyMOL KVFinder-web Tools: a PyMOL v2 plugin for interacting with KVFinder-web service
Docking viewer plug-in for PyMOL
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